fibermagic Documentation

• Installation
  • Using Fibermagic with Google Colab
  • Local Installation using Anaconda
• How to organize your data files
  • Why should you care?
  • How does a data processing pipeline look like?
  • Where should data be stored?
  • How to structure your data into directories
  • How to organize Neurophotometrics data
  • Keep track of which mouse was connected where
  • Troubleshoot Neurophotometrics data
  • Example Datasets
• Data Processing Example
  • A first spike into to investigate the raw data.
  • Look at eating behavior in the full session
  • Synchronize photometry recording with behavioral events from video recording
  • Select appropriate events and calculate perievents
• Further Analysis
• Fibermagic Tutorial
  • Fiber Photometry using Neurophotometrics devices
  • Multiple Colors
  • Multiple Mice
  • Investigating a single raw data file
  • Demodulation of Fiber Photometry Data
  • Demodulate using airPLS
  • Analyzing and Synchronizing Behavioral Data
  • Plot Perievents
• How to analyze big projects
• Release History
  • Initial Release (2022-02-23)
• Minimum Version of Python and NumPy